Index for xtools.gsea.GseaPreranked my_analysis.GseaPreranked.1436880139965

Enrichment in phenotype: na

279 / 587 gene sets are upregulated in phenotype na_pos
128 gene sets are significant at FDR < 25%
57 gene sets are significantly enriched at nominal pvalue < 1%
94 gene sets are significantly enriched at nominal pvalue < 5%
Snapshot of enrichment results
Detailed enrichment results in html format
Detailed enrichment results in excel format (tab delimited text)
Guide to interpret results

Enrichment in phenotype: na

308 / 587 gene sets are upregulated in phenotype na_neg
86 gene sets are significantly enriched at FDR < 25%
44 gene sets are significantly enriched at nominal pvalue < 1%
72 gene sets are significantly enriched at nominal pvalue < 5%
Snapshot of enrichment results
Detailed enrichment results in html format
Detailed enrichment results in excel format (tab delimited text)
Guide to interpret results

Dataset details

The dataset has 18631 features (genes)
No probe set => gene symbol collapsing was requested, so all 18631 features were used

Gene set details

Gene set size filters (min=15, max=500) resulted in filtering out 238 / 825 gene sets
The remaining 587 gene sets were used in the analysis
List of gene sets used and their sizes (restricted to features in the specified dataset)

Gene markers for the na_pos versus na_neg comparison

The dataset has 18631 features (genes)
Detailed rank ordered gene list for all features in the dataset

Global statistics and plots

Plot of p-values vs. NES
Global ES histogram

Other

Parameters used for this analysis

Comments

There were duplicate row identifiers in the specified ranked list. One id was arbitarilly choosen. Details are below. Generally, this is OK, but if you want to avoid this automagic, edit your ranked list so that all row ids are unique # of row ids in original dataset: 18643 # of row UNIQUE ids in original dataset: 18631 # The duplicates were
```
GOLGA7B
CCDC177
RBL1
IDS
CKS1B
LTB4R2
PIK3R2
ZNF177
TMEM236
FAM47E
CRIP1
SDHD
```